SecStrucTools

java.lang.Object

org.biojava.nbio.structure.secstruc.SecStrucTools

public class SecStrucTools extends Object

This class contains methods for obtaining and converting secondary structure information from BioJava Structures.

Since:: 4.1.1
Author:: Aleix Lafita

Constructor Summary

Constructors

Constructor

Description

SecStrucTools()
Method Summary

Modifier and Type

Method

Description

static List<SecStrucElement>

getSecStrucElements(List<Group> groups)

Obtain the List of secondary structure elements (SecStrucElement) of a List of Groups (assumed to be sequential, this is, connected in the original Structure).

static List<SecStrucElement>

getSecStrucElements(Structure s)

Obtain the List of secondary structure elements (SecStrucElement) of a Structure.

static List<SecStrucInfo>

getSecStrucInfo(Structure s)

Obtain the List of secondary structure information (SecStrucInfo) of a Structure.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- SecStrucTools
  
  public SecStrucTools()
Method Details
- getSecStrucInfo
  
  public static List<SecStrucInfo> getSecStrucInfo(Structure s)
  
  Obtain the List of secondary structure information (SecStrucInfo) of a Structure.
  
  Parameters:
  
  s - Structure with SS assignments
  
  Returns:
  
  List of SecStrucInfo objects
- getSecStrucElements
  
  public static List<SecStrucElement> getSecStrucElements(Structure s)
  
  Obtain the List of secondary structure elements (SecStrucElement) of a Structure.
  
  Parameters:
  
  s - Structure with SS assignments
  
  Returns:
  
  List of SecStrucElement objects
- getSecStrucElements
  
  public static List<SecStrucElement> getSecStrucElements(List<Group> groups)
  
  Obtain the List of secondary structure elements (SecStrucElement) of a List of Groups (assumed to be sequential, this is, connected in the original Structure).
  
  Parameters:
  
  groups - Structure with SS assignments
  
  Returns:
  
  List of SecStrucElement objects