Package org.biojava.nbio.structure.symmetry.core

Class ClusterMerger

java.lang.Object
org.biojava.nbio.structure.symmetry.core.ClusterMerger
public class ClusterMerger extends Object
Merges clusters based on their sequence identity. This class does the actual agglomerative clustering calculation, while SequenceAlignmentCluster stores the results.

  • Constructor Details

  • Method Details

    • calcPairwiseAlignments

      public void calcPairwiseAlignments()
      Aligns all pairs of input clusters, calculating their pairwise alignments

    • getMergedClusters

      public List<SequenceAlignmentCluster> getMergedClusters(double sequenceIdentityCutoff)
      Combine clusters based on the given sequence identity
      Parameters:
      sequenceIdentityCutoff -
      Returns: