Package org.biojava.nbio.structure.symmetry.core

Class PairwiseAlignment

java.lang.Object
org.biojava.nbio.structure.symmetry.core.PairwiseAlignment
public class PairwiseAlignment extends Object

  • Constructor Details

  • Method Details

    • getCluster1

      public SequenceAlignmentCluster getCluster1()

    • getCluster2

      public SequenceAlignmentCluster getCluster2()

    • getAlignmentLengthFraction

      public double getAlignmentLengthFraction()

    • getSequenceIdentity

      public double getSequenceIdentity()

    • getRmsd

      public double getRmsd()

    • getAlignment

      public int[][][] getAlignment()

    • setAlignmentLengthFraction

      public void setAlignmentLengthFraction(double alignmentLengthFraction)

    • setSequenceIdentity

      public void setSequenceIdentity(double sequenceIdentity)

    • setRmsd

      public void setRmsd(double rmsd)

    • setAlignment

      public void setAlignment(int[][][] alignment)

    • toString

      public String toString()
      Overrides:
      toString in class Object