ProteinSequenceClusterer

java.lang.Object

org.biojava.nbio.structure.symmetry.core.ProteinSequenceClusterer

public class ProteinSequenceClusterer extends Object

Represents a set of non-identical protein sequences.

Constructor Summary

Constructors

Constructor

Description

ProteinSequenceClusterer(Structure structure1, Structure structure2, QuatSymmetryParameters parameters)

ProteinSequenceClusterer(Structure structure, QuatSymmetryParameters parameters)
Method Summary

Modifier and Type

Method

Description

int

getNucleicAcidChainCount()

int

getProteinChainCount()

List<SequenceAlignmentCluster>

getSequenceAlignmentClusters()

static void

sortSequenceClustersBySize(List<SequenceAlignmentCluster> clusters)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- ProteinSequenceClusterer
  
  public ProteinSequenceClusterer(Structure structure, QuatSymmetryParameters parameters)
- ProteinSequenceClusterer
  
  public ProteinSequenceClusterer(Structure structure1, Structure structure2, QuatSymmetryParameters parameters)
Method Details
- getSequenceAlignmentClusters
  
  public List<SequenceAlignmentCluster> getSequenceAlignmentClusters()
- getProteinChainCount
  
  public int getProteinChainCount()
- getNucleicAcidChainCount
  
  public int getNucleicAcidChainCount()
  
  Returns:
  
  the nucleicAcidChainCount
- sortSequenceClustersBySize
  
  public static void sortSequenceClustersBySize(List<SequenceAlignmentCluster> clusters)