Package org.biojava.nbio.structure.symmetry.core

Class RotationGroup

java.lang.Object
org.biojava.nbio.structure.symmetry.core.RotationGroup
All Implemented Interfaces:
Iterable<Rotation>
public class RotationGroup extends Object implements Iterable<Rotation>
Author:
Peter

  • Constructor Details

    • RotationGroup

      public RotationGroup()

  • Method Details

    • getOrder

      public int getOrder()

    • getRotation

      public Rotation getRotation(int index)

    • addRotation

      public void addRotation(Rotation rotation)

    • setC1

      public void setC1(int n)

    • removeRotation

      public void removeRotation(int index)

    • complete

      public void complete()

    • getPointGroup

      public String getPointGroup()

    • getScores

      public QuatSymmetryScores getScores()
      Returns QuatSymmetryScores averaged over all rotations (except the first rotation, which is the unit operation E)
      Returns:
      mean scores average over rotations

    • setSymmetryDeviation

      public void setSymmetryDeviation(double symmetryDeviation)
      Parameters:
      symmetryDeviation - the symmetryDeviation to set

    • isComplete

      public boolean isComplete()

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • getHigherOrderRotationAxis

      public int getHigherOrderRotationAxis()

    • getTwoFoldsPerpendicular

      public int getTwoFoldsPerpendicular()

    • getPrincipalAxisIndex

      public int getPrincipalAxisIndex()

    • sortByFoldDecending

      public void sortByFoldDecending()

    • iterator

      public Iterator<Rotation> iterator()
      Specified by:
      iterator in interface Iterable<Rotation>