Enum Class CESymmParameters.SymmetryType
java.lang.Object
java.lang.Enum<CESymmParameters.SymmetryType>
org.biojava.nbio.structure.symmetry.internal.CESymmParameters.SymmetryType
- All Implemented Interfaces:
Serializable
,Comparable<CESymmParameters.SymmetryType>
,Constable
- Enclosing class:
- CESymmParameters
The internal symmetry detection can be divided into two types: CLOSE:
includes the circular and dihedral symmetries, and OPEN: includes the
helical and protein repeats symmetries.
All internal symmetry cases share one property: all the repeats have the same 3D transformation.
AUTO option automatically identifies the type. The criterion for classification is that the CLOSE symmetry generates CeSymm alignments with circular permutations (2 blocks in AFPChain), whereas the OPEN symmetry generates alignments without a CP (only one block in AFPChain).
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Nested Class Summary
Nested classes/interfaces inherited from class java.lang.Enum
Enum.EnumDesc<E extends Enum<E>>
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Enum Constant Summary
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Field Summary
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Method Summary
Modifier and TypeMethodDescriptionReturns the enum constant of this class with the specified name.static CESymmParameters.SymmetryType[]
values()
Returns an array containing the constants of this enum class, in the order they are declared.
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Enum Constant Details
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CLOSED
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OPEN
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AUTO
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Field Details
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DEFAULT
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Method Details
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values
Returns an array containing the constants of this enum class, in the order they are declared.- Returns:
- an array containing the constants of this enum class, in the order they are declared
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valueOf
Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum class has no constant with the specified nameNullPointerException
- if the argument is null
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