org.biojava.nbio.structure.symmetry.internal.SymmetryAxes.Axis

public static class SymmetryAxes.Axis extends Object

Represents an axis of symmetry

Constructor Details
- Axis
  
  public Axis(javax.vecmath.Matrix4d operator, int order, CESymmParameters.SymmetryType type, int level, int firstRepeat)
Method Details
- getOperator
  
  public javax.vecmath.Matrix4d getOperator()
  
  Get the transformation operator for this axis as an homogeneous matrix
  
  Returns:
  
  the transformation operator
- setOperator
  
  public void setOperator(javax.vecmath.Matrix4d op)
- getOrder
  
  public int getOrder()
  
  Get the order of this axis (closed symm) or the number of repeats (open symm)
  
  Returns:
  
  the order
- getSymmType
  
  public CESymmParameters.SymmetryType getSymmType()
  
  Returns:
  
  the symmType (OPEN or CLOSED only)
- getRotationAxis
  
  public RotationAxis getRotationAxis()
  
  Get the transformation operator as a rotation axis. For open symmetry this will have a non-zero screw component.
  
  Returns:
  
  a RotationAxis for this Axis
- getLevel
  
  public int getLevel()
  
  Returns:
  
  The level of this axis within it's parent hierarchy, or -1 if unset
- setLevel
  
  public void setLevel(int level)
  
  Parameters:
  
  level - The level of this axis within it's parent hierarchy. Must be positive
- getFirstRepeat
  
  public int getFirstRepeat()
  
  Get the index of the first repeat used by this axis
  
  Returns:
  
  the firstRepeat
- setFirstRepeat
  
  public void setFirstRepeat(int firstRepeat)
  
  Parameters:
  
  firstRepeat - the index of the first repeat used by this axis

Class SymmetryAxes.Axis

Constructor Summary