Package org.biojava.nbio.structure.validation

Class ModelledSubgroup

java.lang.Object
org.biojava.nbio.structure.validation.ModelledSubgroup
public class ModelledSubgroup extends Object

Java class for anonymous complex type.

The following schema fragment specifies the expected content contained within this class. 

 <complexType>
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <element ref="{}angle-outlier" maxOccurs="unbounded" minOccurs="0"/>
         <element ref="{}clash" maxOccurs="unbounded" minOccurs="0"/>
         <element ref="{}bond-outlier" maxOccurs="unbounded" minOccurs="0"/>
         <element ref="{}mog-angle-outlier" maxOccurs="unbounded" minOccurs="0"/>
         <choice>
           <element ref="{}symm-clash" maxOccurs="unbounded" minOccurs="0"/>
           <element ref="{}mog-bond-outlier" maxOccurs="unbounded" minOccurs="0"/>
         </choice>
       </sequence>
       <attribute name="NatomsEDS" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="altcode" use="required" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
       <attribute name="avgoccu" use="required" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="chain" use="required" type="{http://www.w3.org/2001/XMLSchema}NCName" />
       <attribute name="ent" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="flippable-sidechain" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="icode" use="required" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
       <attribute name="ligRSRZ" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="ligRSRnbrMean" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="ligRSRnbrStdev" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="ligRSRnumnbrs" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="model" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="mogul-ignore" type="{http://www.w3.org/2001/XMLSchema}NCName" />
       <attribute name="num-H-reduce" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="owab" use="required" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="phi" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="psi" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="rama" type="{http://www.w3.org/2001/XMLSchema}NCName" />
       <attribute name="resname" use="required" type="{http://www.w3.org/2001/XMLSchema}NCName" />
       <attribute name="resnum" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="rota" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
       <attribute name="rscc" use="required" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="rsr" use="required" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="rsrz" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="said" use="required" type="{http://www.w3.org/2001/XMLSchema}NCName" />
       <attribute name="seq" use="required" type="{http://www.w3.org/2001/XMLSchema}NMTOKEN" />
     </restriction>
   </complexContent>
 </complexType>

  • Field Details

  • Constructor Details

    • ModelledSubgroup

      public ModelledSubgroup()

  • Method Details

    • getAngleOutlier

      public List<AngleOutlier> getAngleOutlier()
      Gets the value of the angleOutlier property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the angleOutlier property.

      For example, to add a new item, do as follows: 

          getAngleOutlier().add(newItem);

      Objects of the following type(s) are allowed in the list AngleOutlier

    • getClash

      public List<Clash> getClash()
      Gets the value of the clash property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the clash property.

      For example, to add a new item, do as follows: 

          getClash().add(newItem);

      Objects of the following type(s) are allowed in the list Clash

    • getBondOutlier

      public List<BondOutlier> getBondOutlier()
      Gets the value of the bondOutlier property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the bondOutlier property.

      For example, to add a new item, do as follows: 

          getBondOutlier().add(newItem);

      Objects of the following type(s) are allowed in the list BondOutlier

    • getMogAngleOutlier

      public List<MogAngleOutlier> getMogAngleOutlier()
      Gets the value of the mogAngleOutlier property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the mogAngleOutlier property.

      For example, to add a new item, do as follows: 

          getMogAngleOutlier().add(newItem);

      Objects of the following type(s) are allowed in the list MogAngleOutlier

    • getSymmClash

      public List<SymmClash> getSymmClash()
      Gets the value of the symmClash property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the symmClash property.

      For example, to add a new item, do as follows: 

          getSymmClash().add(newItem);

      Objects of the following type(s) are allowed in the list SymmClash

    • getMogBondOutlier

      public List<MogBondOutlier> getMogBondOutlier()
      Gets the value of the mogBondOutlier property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the mogBondOutlier property.

      For example, to add a new item, do as follows: 

          getMogBondOutlier().add(newItem);

      Objects of the following type(s) are allowed in the list MogBondOutlier

    • getNatomsEDS

      public BigInteger getNatomsEDS()
      Gets the value of the natomsEDS property.
      Returns:
      possible object is BigInteger

    • setNatomsEDS

      public void setNatomsEDS(BigInteger value)
      Sets the value of the natomsEDS property.
      Parameters:
      value - allowed object is BigInteger

    • getAltcode

      public String getAltcode()
      Gets the value of the altcode property.
      Returns:
      possible object is String

    • setAltcode

      public void setAltcode(String value)
      Sets the value of the altcode property.
      Parameters:
      value - allowed object is String

    • getAvgoccu

      public BigDecimal getAvgoccu()
      Gets the value of the avgoccu property.
      Returns:
      possible object is BigDecimal

    • setAvgoccu

      public void setAvgoccu(BigDecimal value)
      Sets the value of the avgoccu property.
      Parameters:
      value - allowed object is BigDecimal

    • getChain

      public String getChain()
      Gets the value of the chain property.
      Returns:
      possible object is String

    • setChain

      public void setChain(String value)
      Sets the value of the chain property.
      Parameters:
      value - allowed object is String

    • getEnt

      public BigInteger getEnt()
      Gets the value of the ent property.
      Returns:
      possible object is BigInteger

    • setEnt

      public void setEnt(BigInteger value)
      Sets the value of the ent property.
      Parameters:
      value - allowed object is BigInteger

    • getFlippableSidechain

      public BigInteger getFlippableSidechain()
      Gets the value of the flippableSidechain property.
      Returns:
      possible object is BigInteger

    • setFlippableSidechain

      public void setFlippableSidechain(BigInteger value)
      Sets the value of the flippableSidechain property.
      Parameters:
      value - allowed object is BigInteger

    • getIcode

      public String getIcode()
      Gets the value of the icode property.
      Returns:
      possible object is String

    • setIcode

      public void setIcode(String value)
      Sets the value of the icode property.
      Parameters:
      value - allowed object is String

    • getLigRSRZ

      public BigDecimal getLigRSRZ()
      Gets the value of the ligRSRZ property.
      Returns:
      possible object is BigDecimal

    • setLigRSRZ

      public void setLigRSRZ(BigDecimal value)
      Sets the value of the ligRSRZ property.
      Parameters:
      value - allowed object is BigDecimal

    • getLigRSRnbrMean

      public BigDecimal getLigRSRnbrMean()
      Gets the value of the ligRSRnbrMean property.
      Returns:
      possible object is BigDecimal

    • setLigRSRnbrMean

      public void setLigRSRnbrMean(BigDecimal value)
      Sets the value of the ligRSRnbrMean property.
      Parameters:
      value - allowed object is BigDecimal

    • getLigRSRnbrStdev

      public BigDecimal getLigRSRnbrStdev()
      Gets the value of the ligRSRnbrStdev property.
      Returns:
      possible object is BigDecimal

    • setLigRSRnbrStdev

      public void setLigRSRnbrStdev(BigDecimal value)
      Sets the value of the ligRSRnbrStdev property.
      Parameters:
      value - allowed object is BigDecimal

    • getLigRSRnumnbrs

      public BigInteger getLigRSRnumnbrs()
      Gets the value of the ligRSRnumnbrs property.
      Returns:
      possible object is BigInteger

    • setLigRSRnumnbrs

      public void setLigRSRnumnbrs(BigInteger value)
      Sets the value of the ligRSRnumnbrs property.
      Parameters:
      value - allowed object is BigInteger

    • getModel

      public BigInteger getModel()
      Gets the value of the model property.
      Returns:
      possible object is BigInteger

    • setModel

      public void setModel(BigInteger value)
      Sets the value of the model property.
      Parameters:
      value - allowed object is BigInteger

    • getMogulIgnore

      public String getMogulIgnore()
      Gets the value of the mogulIgnore property.
      Returns:
      possible object is String

    • setMogulIgnore

      public void setMogulIgnore(String value)
      Sets the value of the mogulIgnore property.
      Parameters:
      value - allowed object is String

    • getNumHReduce

      public BigInteger getNumHReduce()
      Gets the value of the numHReduce property.
      Returns:
      possible object is BigInteger

    • setNumHReduce

      public void setNumHReduce(BigInteger value)
      Sets the value of the numHReduce property.
      Parameters:
      value - allowed object is BigInteger

    • getOwab

      public BigDecimal getOwab()
      Gets the value of the owab property.
      Returns:
      possible object is BigDecimal

    • setOwab

      public void setOwab(BigDecimal value)
      Sets the value of the owab property.
      Parameters:
      value - allowed object is BigDecimal

    • getPhi

      public BigDecimal getPhi()
      Gets the value of the phi property.
      Returns:
      possible object is BigDecimal

    • setPhi

      public void setPhi(BigDecimal value)
      Sets the value of the phi property.
      Parameters:
      value - allowed object is BigDecimal

    • getPsi

      public BigDecimal getPsi()
      Gets the value of the psi property.
      Returns:
      possible object is BigDecimal

    • setPsi

      public void setPsi(BigDecimal value)
      Sets the value of the psi property.
      Parameters:
      value - allowed object is BigDecimal

    • getRama

      public String getRama()
      Gets the value of the rama property.
      Returns:
      possible object is String

    • setRama

      public void setRama(String value)
      Sets the value of the rama property.
      Parameters:
      value - allowed object is String

    • getResname

      public String getResname()
      Gets the value of the resname property.
      Returns:
      possible object is String

    • setResname

      public void setResname(String value)
      Sets the value of the resname property.
      Parameters:
      value - allowed object is String

    • getResnum

      public BigInteger getResnum()
      Gets the value of the resnum property.
      Returns:
      possible object is BigInteger

    • setResnum

      public void setResnum(BigInteger value)
      Sets the value of the resnum property.
      Parameters:
      value - allowed object is BigInteger

    • getRota

      public String getRota()
      Gets the value of the rota property.
      Returns:
      possible object is String

    • setRota

      public void setRota(String value)
      Sets the value of the rota property.
      Parameters:
      value - allowed object is String

    • getRscc

      public BigDecimal getRscc()
      Gets the value of the rscc property.
      Returns:
      possible object is BigDecimal

    • setRscc

      public void setRscc(BigDecimal value)
      Sets the value of the rscc property.
      Parameters:
      value - allowed object is BigDecimal

    • getRsr

      public BigDecimal getRsr()
      Gets the value of the rsr property.
      Returns:
      possible object is BigDecimal

    • setRsr

      public void setRsr(BigDecimal value)
      Sets the value of the rsr property.
      Parameters:
      value - allowed object is BigDecimal

    • getRsrz

      public BigDecimal getRsrz()
      Gets the value of the rsrz property.
      Returns:
      possible object is BigDecimal

    • setRsrz

      public void setRsrz(BigDecimal value)
      Sets the value of the rsrz property.
      Parameters:
      value - allowed object is BigDecimal

    • getSaid

      public String getSaid()
      Gets the value of the said property.
      Returns:
      possible object is String

    • setSaid

      public void setSaid(String value)
      Sets the value of the said property.
      Parameters:
      value - allowed object is String

    • getSeq

      public String getSeq()
      Gets the value of the seq property.
      Returns:
      possible object is String

    • setSeq

      public void setSeq(String value)
      Sets the value of the seq property.
      Parameters:
      value - allowed object is String