TaxonomyDataManager

java.lang.Object

org.forester.archaeopteryx.tools.RunnableProcess

org.forester.analysis.TaxonomyDataManager

All Implemented Interfaces:: Runnable

public final class TaxonomyDataManager extends RunnableProcess

Constructor Summary

Constructors

Constructor

Description

TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy)

TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy, boolean delete, boolean allow_simple_name)
Method Summary

Modifier and Type

Method

Description

static final UniProtTaxonomy

obtainUniProtTaxonomy(String simple_name, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt)

static final UniProtTaxonomy

obtainUniProtTaxonomy(Taxonomy tax, Object query, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt)

void

run()

Methods inherited from class org.forester.archaeopteryx.tools.RunnableProcess
end, start

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- TaxonomyDataManager
  
  public TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy)
- TaxonomyDataManager
  
  public TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy, boolean delete, boolean allow_simple_name)
Method Details
- obtainUniProtTaxonomy
  
  public static final UniProtTaxonomy obtainUniProtTaxonomy(Taxonomy tax, Object query, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt) throws IOException, AncestralTaxonomyInferenceException
  
  Throws:
  
  IOException
  
  AncestralTaxonomyInferenceException
- obtainUniProtTaxonomy
  
  public static final UniProtTaxonomy obtainUniProtTaxonomy(String simple_name, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt) throws IOException, AncestralTaxonomyInferenceException
  
  Throws:
  
  IOException
  
  AncestralTaxonomyInferenceException
- run
  
  public void run()