Package org.forester.archaeopteryx

Class TreePanelUtil

java.lang.Object
org.forester.archaeopteryx.TreePanelUtil
public class TreePanelUtil extends Object

  • Constructor Details

    • TreePanelUtil

      public TreePanelUtil()

  • Method Details

    • createUriForSeqWeb

      public static final String createUriForSeqWeb(PhylogenyNode node, Configuration conf, TreePanel tp)

    • createUrisForPdbWeb

      public static List<String> createUrisForPdbWeb(PhylogenyNode node, List<Accession> pdb_accs, Configuration configuration, TreePanel treePanel)

    • obtainDistinctTaxonomies

      public static Set<Taxonomy> obtainDistinctTaxonomies(PhylogenyNode node)
      Returns the set of distinct taxonomies of all external nodes of node. If at least one the external nodes has no taxonomy, null is returned.

    • showExtDescNodeDataUserSelectedHelper

      public static final void showExtDescNodeDataUserSelectedHelper(org.forester.archaeopteryx.ControlPanel cp, PhylogenyNode node, List<String> data)

    • showExtDescNodeDataUserSelectedHelperHelper

      public static final void showExtDescNodeDataUserSelectedHelperHelper(String s, StringBuilder sb)

    • showInformationMessage

      public static final void showInformationMessage(Component parent, String title, String msg)