PhylogeneticInferrer

java.lang.Object

org.forester.archaeopteryx.tools.RunnableProcess

org.forester.archaeopteryx.tools.PhylogeneticInferrer

All Implemented Interfaces:: Runnable

public class PhylogeneticInferrer extends RunnableProcess

Nested Class Summary

Nested Classes

Modifier and Type

Class

Description

static enum

PhylogeneticInferrer.MSA_PRG
Field Summary

Fields

Modifier and Type

Field

Description

static final String

MSA_FILE_SUFFIX

static final String

PWD_FILE_SUFFIX
Constructor Summary

Constructors

Constructor

Description

PhylogeneticInferrer(List<MolecularSequence> seqs, PhylogeneticInferenceOptions options, MainFrameApplication mf)

PhylogeneticInferrer(Msa msa, PhylogeneticInferenceOptions options, MainFrameApplication mf)
Method Summary

Modifier and Type

Method

Description

void

run()

Methods inherited from class org.forester.archaeopteryx.tools.RunnableProcess
end, start

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- MSA_FILE_SUFFIX
  
  public static final String MSA_FILE_SUFFIX
  See Also:
  
  Constant Field Values
- PWD_FILE_SUFFIX
  
  public static final String PWD_FILE_SUFFIX
  See Also:
  
  Constant Field Values
Constructor Details
- PhylogeneticInferrer
  
  public PhylogeneticInferrer(List<MolecularSequence> seqs, PhylogeneticInferenceOptions options, MainFrameApplication mf)
- PhylogeneticInferrer
  
  public PhylogeneticInferrer(Msa msa, PhylogeneticInferenceOptions options, MainFrameApplication mf)
Method Details
- run
  
  public void run()