DevelopmentTools

java.lang.Object

org.forester.development.DevelopmentTools

public final class DevelopmentTools extends Object

Method Summary

Modifier and Type

Method

Description

static Phylogeny

createBalancedPhylogeny(int levels, int children_per_node)

Creates a completely balanced rooted phylogeny with a given number of levels and children per node.

static void

intervalNumberSpecies(Phylogeny t, int i)

Sets the species name of the external Nodes of Phylogeny t to 1, 1+i, 2, 2+i, 3, 3+i, ....

static void

numberSpeciesInDescOrder(Phylogeny t)

Sets the species namea of the external Nodes of Phylogeny t to descending integers, ending with 1.

static void

numberSpeciesInOrder(Phylogeny t)

Sets the species namea of the external Nodes of Phylogeny t to ascending integers, starting with 1.

static void

randomizeSpecies(int min, int max, Phylogeny t)

Sets the species names of the external Nodes of Phylogeny t to a random positive integer number between (and including) min and max.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details
- createBalancedPhylogeny
  
  public static Phylogeny createBalancedPhylogeny(int levels, int children_per_node)
  
  Creates a completely balanced rooted phylogeny with a given number of levels and children per node.
  
  Parameters:
  
  levels -
  
  children_per_node -
  
  Returns:
  
  a completely balanced rooted phylogeny
- intervalNumberSpecies
  
  public static void intervalNumberSpecies(Phylogeny t, int i)
  
  Sets the species name of the external Nodes of Phylogeny t to 1, 1+i, 2, 2+i, 3, 3+i, .... Examples: i=2: 1, 3, 2, 4 i=4: 1, 5, 2, 6, 3, 7, 4, 8 i=8: 1, 9, 2, 10, 3, 11, 4, 12, ...
- numberSpeciesInDescOrder
  
  public static void numberSpeciesInDescOrder(Phylogeny t)
  
  Sets the species namea of the external Nodes of Phylogeny t to descending integers, ending with 1.
- numberSpeciesInOrder
  
  public static void numberSpeciesInOrder(Phylogeny t)
  
  Sets the species namea of the external Nodes of Phylogeny t to ascending integers, starting with 1.
- randomizeSpecies
  
  public static void randomizeSpecies(int min, int max, Phylogeny t)
  
  Sets the species names of the external Nodes of Phylogeny t to a random positive integer number between (and including) min and max.
  
  Parameters:
  
  t - whose external species names are to be randomized
  
  min - minimal value for random numbers
  
  max - maximum value for random numbers