Package org.forester.msa_compactor

Class MsaProperties

java.lang.Object
org.forester.msa_compactor.MsaProperties
public final class MsaProperties extends Object

  • Constructor Details

    • MsaProperties

      public MsaProperties(int number_of_sequences, int length, double gap_ratio, double entropy7, double entropy21, double avg_number_of_gaps, String removed_seq)

    • MsaProperties

      public MsaProperties(Msa msa, String removed_seq, boolean calculate_normalized_shannon_entropy)

  • Method Details

    • getEntropy21

      public final double getEntropy21()

    • getEntropy7

      public final double getEntropy7()

    • getGapRatio

      public final double getGapRatio()

    • getAvgNumberOfGaps

      public final double getAvgNumberOfGaps()

    • getLength

      public final int getLength()

    • getNumberOfSequences

      public final int getNumberOfSequences()

    • getRemovedSeq

      public final String getRemovedSeq()