Package org.forester.surfacing

Class DomainLengths

java.lang.Object
org.forester.surfacing.DomainLengths
public class DomainLengths extends Object

  • Constructor Details

    • DomainLengths

      public DomainLengths(String domain_id)

  • Method Details

    • addLength

      public void addLength(Species species, int domain_length)

    • calculateMeanBasedStatistics

      public DescriptiveStatistics calculateMeanBasedStatistics()
      Returns descriptive statistics based on the arithmetic means for each species.
      Returns:

    • calculateZScoreForSpecies

      public double calculateZScoreForSpecies(Species species)
      Note. This is not technically a Z-score since the distribution of means is unknown (and not normal).
      Parameters:
      species -
      Returns:

    • getDomainId

      public String getDomainId()

    • getLengthStatistic

      public DescriptiveStatistics getLengthStatistic(Species species)

    • getLengthStatisticsList

      public List<DescriptiveStatistics> getLengthStatisticsList()

    • getMeanBasedOutlierSpecies

      public List<Species> getMeanBasedOutlierSpecies(double z_score_limit)

    • getSpeciesList

      public List<Species> getSpeciesList()

    • isHasLengthStatistic

      public boolean isHasLengthStatistic(Species species)