DomainLengthsTable

java.lang.Object

org.forester.surfacing.DomainLengthsTable

public class DomainLengthsTable extends Object

Constructor Summary

Constructors

Constructor

Description

DomainLengthsTable()
Method Summary

Modifier and Type

Method

Description

void

addLengths(List<Protein> protein_list)

DescriptiveStatistics

calculateMeanBasedStatisticsForAllSpecies()

DescriptiveStatistics

calculateMeanBasedStatisticsForDomain(String domain_id)

DescriptiveStatistics

calculateMeanBasedStatisticsForSpecies(Species species)

StringBuilder

createMeanBasedStatisticsPerSpeciesTable()

DomainLengths

getDomainLengths(String domain_id)

List<DomainLengths>

getDomainLengthsList()

DescriptiveStatistics

getLengthStatistic(String domain_id, Species species)

List<Species>

getSpecies()

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- DomainLengthsTable
  
  public DomainLengthsTable()
Method Details
- addLengths
  
  public void addLengths(List<Protein> protein_list)
- calculateMeanBasedStatisticsForAllSpecies
  
  public DescriptiveStatistics calculateMeanBasedStatisticsForAllSpecies()
- calculateMeanBasedStatisticsForDomain
  
  public DescriptiveStatistics calculateMeanBasedStatisticsForDomain(String domain_id)
- calculateMeanBasedStatisticsForSpecies
  
  public DescriptiveStatistics calculateMeanBasedStatisticsForSpecies(Species species)
- createMeanBasedStatisticsPerSpeciesTable
  
  public StringBuilder createMeanBasedStatisticsPerSpeciesTable()
- getDomainLengths
  
  public DomainLengths getDomainLengths(String domain_id)
- getDomainLengthsList
  
  public List<DomainLengths> getDomainLengthsList()
- getLengthStatistic
  
  public DescriptiveStatistics getLengthStatistic(String domain_id, Species species)
- getSpecies
  
  public List<Species> getSpecies()