SupportCount

java.lang.Object

org.forester.tools.SupportCount

public final class SupportCount extends Object

Method Summary

Modifier and Type

Method

Description

static double

compare(Phylogeny phylogeny, Phylogeny evaluator_phylogeny, boolean strip_evaluator_phylogeny, boolean update_support_in_phylogeny, boolean re_root)

static void

count(Phylogeny phylogeny, Phylogeny[] evaluator_phylogenies, boolean strip_evaluator_phylogenies, boolean verbose)

static List<Phylogeny>

count(Phylogeny phylogeny, Phylogeny[] evaluator_phylogenies, boolean strip_evaluator_phylogenies, double similarity_threshold, boolean verbose)

This counts the support of topology phylogeny by the topologies in phylogenies.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details
- compare
  
  public static double compare(Phylogeny phylogeny, Phylogeny evaluator_phylogeny, boolean strip_evaluator_phylogeny, boolean update_support_in_phylogeny, boolean re_root)
- count
  
  public static void count(Phylogeny phylogeny, Phylogeny[] evaluator_phylogenies, boolean strip_evaluator_phylogenies, boolean verbose)
- count
  
  public static List<Phylogeny> count(Phylogeny phylogeny, Phylogeny[] evaluator_phylogenies, boolean strip_evaluator_phylogenies, double similarity_threshold, boolean verbose)
  
  This counts the support of topology phylogeny by the topologies in phylogenies. If phylogenies contains topogies with names not present in phylogeny, strip_phylogenies must be set to true. phylogeny must not contain names not found in all phylogenies.
  
  Parameters:
  
  phylogeny - the topology to be evaluated
  
  evaluator_phylogenies - the topologies used for evaluation
  
  strip_evaluator_phylogenies - set to true if phylogenies contains topologies with names not present in phylogeny