UniProtTaxonomy

java.lang.Object

org.forester.ws.seqdb.UniProtTaxonomy

public final class UniProtTaxonomy extends Object

Field Summary

Fields

Modifier and Type

Field

Description

static final String

ARCHAEA

static final String

BACTERIA

static final String

CELLULAR_ORGANISMS

static final String

EUKARYOTA

static final String

VIRUSES

static final String

X
Constructor Summary

Constructors

Constructor

Description

UniProtTaxonomy(String line)

UniProtTaxonomy(List<String> lineage, String code, String common_name, String scientific_name, String synonym, String rank, String id)
Method Summary

Modifier and Type

Method

Description

UniProtTaxonomy

copy()

Creates deep copy for all fields, except lineage.

static final UniProtTaxonomy

createSpecialFromScientificName(String sn)

String

getCode()

String

getCommonName()

String

getId()

List<String>

getLineage()

String

getRank()

String

getScientificName()

String

getSynonym()

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- ARCHAEA
  
  public static final String ARCHAEA
  See Also:
  
  Constant Field Values
- BACTERIA
  
  public static final String BACTERIA
  See Also:
  
  Constant Field Values
- EUKARYOTA
  
  public static final String EUKARYOTA
  See Also:
  
  Constant Field Values
- CELLULAR_ORGANISMS
  
  public static final String CELLULAR_ORGANISMS
  See Also:
  
  Constant Field Values
- VIRUSES
  
  public static final String VIRUSES
  See Also:
  
  Constant Field Values
- X
  
  public static final String X
  See Also:
  
  Constant Field Values
Constructor Details
- UniProtTaxonomy
  
  public UniProtTaxonomy(String line)
- UniProtTaxonomy
  
  public UniProtTaxonomy(List<String> lineage, String code, String common_name, String scientific_name, String synonym, String rank, String id)
Method Details
- copy
  
  public UniProtTaxonomy copy()
  
  Creates deep copy for all fields, except lineage.
  
  Returns:
- getCode
  
  public String getCode()
- getCommonName
  
  public String getCommonName()
- getId
  
  public String getId()
- getLineage
  
  public List<String> getLineage()
- getRank
  
  public String getRank()
- getScientificName
  
  public String getScientificName()
- getSynonym
  
  public String getSynonym()
- createSpecialFromScientificName
  
  public static final UniProtTaxonomy createSpecialFromScientificName(String sn)